The package implements an algorithm for fast gene set enrichment
analysis. Using the fast algorithm allows to make more permutations and get
more fine grained p-values, which allows to use accurate stantard approaches to
multiple hypothesis correction.

Fast Gene Set Enrichment Analysis

package-ubuntu-20.04-r-4.0.5#cran#fgsea-1.16.0

<p>Returns a list of pathways from a GMT file.
</p>

<p>A list of vectors with gene sets.
</p>

pathways <- gmtPathways(system.file(
     "extdata", "mouse.reactome.gmt", package="fgsea"))

package-ubuntu-20.04-r-4.0.5#cran#fgsea-1.16.0#docs#gmtPathways

gmtPathways

Description

Usage

Arguments

Value

Examples

fgsea

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