fgsea: writeGmtPathways – R documentation

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writeGmtPathways

Write collection of pathways (list of vectors) to a gmt file

Write collection of pathways (list of vectors) to a gmt file

writeGmtPathways(pathways, gmt.file)

`pathways`	a named list of vectors with gene ids
`gmt.file`	name of the output file

data(examplePathways)
writeGmtPathways(examplePathways, tempfile("examplePathways", fileext=".gmt"))

Fast Gene Set Enrichment Analysis

v1.16.0

MIT + file LICENCE

Authors

Gennady Korotkevich [aut], Vladimir Sukhov [aut], Nikolay Budin [ctb], Alexey Sergushichev [aut, cre]

Initial release