foieGras: fmap – R documentation

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foieGras

fmap

Description

map foieGras fitted or predicted locations, with or without Argos observations, optionally apply a different projection

Usage

fmap(
  x,
  y = NULL,
  what = c("fitted", "predicted"),
  conf = TRUE,
  obs = FALSE,
  obs.shp = 17,
  by.date = TRUE,
  crs = NULL,
  ext.rng = c(0.05, 0.05),
  size = 0.25,
  col = "black",
  lines = FALSE,
  landfill = grey(0.6),
  pal = "Zissou1",
  rev = FALSE
)

Arguments

`x`	a `foieGras` ssm fit object with class `fG_ssm`
`y`	optionally, a `foieGras` mpm fit object with class `fG_mpm`; default is NULL
`what`	specify which location estimates to map: fitted or predicted
`conf`	include confidence regions around estimated location (logical; default = TRUE, unless y is an mpm fit object then conf is FALSE)
`obs`	include Argos observations on map (logical; default = FALSE)
`obs.shp`	point shape for observations (default = 17)
`by.date`	when mapping single tracks, should locations be coloured by date (logical; default = TRUE if nrow(x) == 1 else FALSE)
`crs`	`proj4string` for re-projecting locations, if NULL the default projection ("+proj=merc") for the fitting the SSM will be used
`ext.rng`	factors to extend the plot range in x and y dimensions (can exceed 1)
`size`	size of estimated location points (size = NA will draw no points). Optionally, a vector of length 2 with size of observed locations given by 2nd value (ignored if obs = FALSE)
`col`	colour of observed locations (ignored if obs = FALSE)
`lines`	logical indicating if lines are added to connect estimated locations (default = FALSE)
`landfill`	colour to use for land (default = grey(0.6))
`pal`	`hcl.colors` palette to use (default: "Zissou1"; type `hcl.pals()` for options)
`rev`	reverse colour palette (logical)

foieGras

Fit Continuous-Time State-Space and Latent Variable Models for Quality Control of Argos Satellite (and Other) Telemetry Data and for Estimating Movement Behaviour

v0.7-6

MIT + file LICENSE

Authors

Ian Jonsen [aut, cre, cph], Toby Patterson [aut, ctb]

Initial release

2021-04-26

fmap

Description

Usage

Arguments

foieGras

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