Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Analysis and Visualization Tools for Genetic Barcode Data

package-ubuntu-20.04-r-4.0.5#cran#genBaRcode-1.2.4

<p>Creates a search file for a command line grep search.
</p>

.createPatternFile(bc_backbone, patterns_file)

<table summary="R argblock">
<tr valign="top">
<td><code>bc_backbone</code></td>
<td>
<p>a character string (barcode pattern).</p>
</td>
</tr>
<tr valign="top">
<td><code>patterns_file</code></td>
<td>
<p>a character string (file name)</p>
</td>
</tr>
</table>

package-ubuntu-20.04-r-4.0.5#cran#genBaRcode-1.2.4#docs#dot-createPatternFile

dot-createPatternFile

Description

Usage

Arguments

genBaRcode

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`bc_backbone`	a character string (barcode pattern).
`patterns_file`	a character string (file name)