Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Analysis and Visualization Tools for Genetic Barcode Data

package-ubuntu-20.04-r-4.0.5#cran#genBaRcode-1.2.4

<p>Launches the corresponding shiny app.
</p>

genBaRcode_app(dat_dir = system.file("extdata", package = "genBaRcode"))

<table summary="R argblock"><tr valign="top">
<td><code>dat_dir</code></td>
<td>
<p>a character string, identifying the path to one or more fast(q) files which shall be analysed, default is the
path to the package inherent example fastq file</p>
</td>
</tr></table>

package-ubuntu-20.04-r-4.0.5#cran#genBaRcode-1.2.4#docs#genBaRcode_app

genBaRcode_app

Description

Usage

Arguments

genBaRcode

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