genBaRcode: plotReadFrequencies – R documentation

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plotReadFrequencies

Plotting a Barplot

Generates a barplot visualising the abundances of unique read count frequencies.

plotReadFrequencies(
  BC_dat,
  b = 30,
  bw = NULL,
  show_it = FALSE,
  log = FALSE,
  dens = FALSE
)

`BC_dat`	a BCdat object.
`b`	an integer value, defining the number of bins. Overridden by bw. Defaults to 30. (see '?ggplot2::geom_histogram')
`bw`	an integer value, defining the width of the bins.
`show_it`	a logical vaue. If TRUE, the respective values are printed on the console?
`log`	a logical vaue. If TRUE, the y-axis will be on a log scale.
`dens`	a logical vaue. If TRUE, the density of the read frequencies will be plotted.

ggplot2 object

data(BC_dat)
plotReadFrequencies <- function(BC_dat, b = 10, show_it = TRUE)

Analysis and Visualization Tools for Genetic Barcode Data

v1.2.4

LGPL

Authors

Lars Thielecke <lars.thielecke@tu-dresden.de>

Initial release