Quality Filtering
Excludes all sequences of a given fastq file below a certain quality value.
qualityFiltering(file_name, source_dir, min_score = 30)
file_name |
a character string containing the name of the source file. |
source_dir |
a character string containing the path to the source directory. |
min_score |
an integer value representing the minimal average phred score a read has to achieve in order to be accepted. |
a ShortRead object.
## Not run:
source_dir <- system.file("extdata", package = "genBaRcode")
qualityFiltering(file_name = "test_data.fastq.gz", source_dir,
results_dir = getwd(), min_score = 30)
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.