Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

Plot Multiple Sequence Alignment using 'ggplot2'

package-ubuntu-20.04-r-4.0.5#cran#ggmsa-0.0.6

<p>A color scheme of Culstal. The algorithm to assign colors for Multiple Sequence.
</p>

<table summary="R argblock"><tr valign="top">
<td><code>y</code></td>
<td>
<p>sequence alignment with data frame, generated by tidy_msa().</p>
</td>
</tr></table>

package-ubuntu-20.04-r-4.0.5#cran#ggmsa-0.0.6#docs#color_Clustal

color_Clustal

Description

Usage

Arguments

ggmsa

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