ggmsa: color_scheme – R documentation

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color_scheme

Assigning colors to sequence alignment.

Assigning colors to sequence alignment.

color_scheme(y, color = "Chemistry_AA", custom_color = NULL)

`y`	sequence alignment with data frame, generated by tidy_msa().
`color`	a Color scheme. One of 'Clustal', 'Chemistry_AA', 'Shapely_AA', 'Zappo_AA', 'Taylor_AA', 'LETTER', 'CN6', 'Chemistry_NT', 'Shapely_NT', 'Zappo_NT', 'Taylor_NT'. Defaults is 'Chemistry_AA'.
`custom_color`	A data frame with two cloumn called "names" and "color".Customize the color scheme.

Plot Multiple Sequence Alignment using 'ggplot2'

v0.0.6

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Lang Zhou [aut], Huina Huang [ctb]

Initial release