Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

Plot Multiple Sequence Alignment using 'ggplot2'

package-ubuntu-20.04-r-4.0.5#cran#ggmsa-0.0.6

<p>Multiple sequence alignment layer for ggplot2. It plot points of GC content.
</p>

library(ggplot2) 
#plot GC content 
f <- system.file("extdata/LeaderRepeat_All.fa", package="ggmsa")
ggmsa(f, font = NULL, color="Chemistry_NT") + geom_GC()

package-ubuntu-20.04-r-4.0.5#cran#ggmsa-0.0.6#docs#geom_GC

geom_GC

Description

Usage

Author(s)

Examples

ggmsa

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