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geom_seed

geom_seed

Description

Highlighting the seed in miRNA sequences

Usage

geom_seed(seed, star = FALSE)

Arguments

seed

a character string.Specifying the miRNA seed sequence like 'GAGGUAG'.
star

a logical value indicating whether asterisks should be disaplayed.

Value

a ggplot layer

Author(s)

Lang Zhou

Examples

miRNA_sequences <- system.file("extdata/seedSample.fa", package="ggmsa")
ggmsa(miRNA_sequences, font = 'DroidSansMono', color = "Chemistry_NT", none_bg = TRUE) +
geom_seed(seed = "GAGGUAG", star = FALSE)
ggmsa(miRNA_sequences, font = 'DroidSansMono', color = "Chemistry_NT") +
geom_seed(seed = "GAGGUAG", star = TRUE)
ggmsa

Plot Multiple Sequence Alignment using 'ggplot2'

v0.0.6
Artistic-2.0
Authors
Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Lang Zhou [aut], Huina Huang [ctb]
Initial release

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