ggmsa: get_consensus – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

get_consensus

calling the consensus sequence.

calling the consensus sequence.

get_consensus(tidy, ignore_gaps = FALSE, ref = NULL)

`tidy`	sequence alignment with data frame, generated by tidy_msa().
`ignore_gaps`	a logical value. When selected TRUE, gaps in column are treated as if that row didn't exist.
`ref`	a character string. Specifying the reference sequence which should be one of input sequences when 'consensus_views' is TRUE.

Plot Multiple Sequence Alignment using 'ggplot2'

v0.0.6

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Lang Zhou [aut], Huina Huang [ctb]

Initial release