ggmsa: tidy_msa – R documentation

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tidy_msa

Convert msa file/object to tidy data frame.

tidy_msa(msa, start = NULL, end = NULL)

`msa`	multiple sequence alignment file or sequence object in DNAStringSet, RNAStringSet, AAStringSet, BStringSet, DNAMultipleAlignment, RNAMultipleAlignment, AAMultipleAlignment, DNAbin or AAbin
`start`	start position to extract subset of alignment
`end`	end position to extract subset of alignemnt

tibble data frame

Guangchuang Yu

Plot Multiple Sequence Alignment using 'ggplot2'

v0.0.6

Artistic-2.0

Authors

Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Lang Zhou [aut], Huina Huang [ctb]

Initial release