Quick sequence logo plot
ggseqlogo is a shortcut for generating sequence logos.
It adds the ggseqlogo theme theme_logo by default, and facets when multiple input data are provided.
It serves as a convenient wrapper, so to customise logos beyond the defaults here, please use geom_logo.
ggseqlogo(data, facet = "wrap", scales = "free_x", ncol = NULL, nrow = NULL, ...)
data |
Character vector of sequences or named list of sequences. All sequences must have same width |
facet |
Facet type, can be 'wrap' or 'grid' |
scales |
Facet scales, see |
ncol |
Number of columns, works only when |
nrow |
Number of rows, same as |
... |
Additional arguments passed to |
# Load sample data data(ggseqlogo_sample) # Plot a single DNA sequence logo p1 = ggseqlogo( seqs_dna[[1]] ) print(p1) # Plot multiple sequence logos at once p2 = ggseqlogo( seqs_dna ) print(p2)
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.