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collapse

collapse-ggtree

Description

collapse a clade

Usage

## S3 method for class 'ggtree'
collapse(x = NULL, node, mode = "none", clade_name = NULL, ...)

Arguments

x

tree view (i.e. the ggtree object). If tree_view is NULL, the last ggplot will be used.
node

internal node number
mode

one of 'none', 'max', 'min' and 'mixed'
clade_name

set clade name. If clade_name = NULL, do nothing
...

additional parameters

Value

tree view

Author(s)

Guangchuang Yu

See Also

expand

ggtree

an R package for visualization of tree and annotation data

v2.4.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>), Yonghe Xia [ctb], Justin Silverman [ctb], Bradley Jones [ctb], Watal M. Iwasaki [ctb], Ruizhu Huang [ctb]
Initial release

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