ggtree: geom_strip – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

geom_strip

Description

annotate associated taxa (from taxa1 to taxa2, can be Monophyletic, Polyphyletic or Paraphyletc Taxa) with bar and (optional) text label

Usage

geom_strip(
  taxa1,
  taxa2,
  label,
  offset = 0,
  offset.text = 0,
  align = TRUE,
  barsize = 0.5,
  extend = 0,
  fontsize = 3.88,
  angle = 0,
  geom = "text",
  hjust = 0,
  color = "black",
  fill = NA,
  family = "sans",
  parse = FALSE,
  ...
)

Arguments

`taxa1`	taxa1
`taxa2`	taxa2
`label`	optional label
`offset`	offset of bar and text from the clade
`offset.text`	offset of text from bar
`align`	logical
`barsize`	size of bar
`extend`	extend bar vertically
`fontsize`	size of text
`angle`	angle of text
`geom`	one of 'text' or 'label'
`hjust`	hjust
`color`	color for bar and label
`fill`	fill label background, only work with geom='label'
`family`	sans by default, can be any supported font
`parse`	logical, whether parse label
`...`	additional parameter

Value

ggplot layers

Author(s)

Guangchuang Yu

ggtree

an R package for visualization of tree and annotation data

v2.4.2

Artistic-2.0

Authors

Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>), Yonghe Xia [ctb], Justin Silverman [ctb], Bradley Jones [ctb], Watal M. Iwasaki [ctb], Ruizhu Huang [ctb]

Initial release