ggtree: getSubtreeUnrooted.df – R documentation

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getSubtreeUnrooted.df

getSubtreeUnrooted

Description

Get all subtrees of node, as well as remaining branches of parent (ie, rest of tree structure as subtree) return named list of subtrees with list name as starting node id.

Usage

getSubtreeUnrooted.df(df, node)

Arguments

`df`	tree data.frame
`node`	is the tree node id from which the subtrees are derived.

Value

named list of subtrees with the root id of subtree and list of node id's making up subtree.

ggtree

an R package for visualization of tree and annotation data

v2.4.2

Artistic-2.0

Authors

Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>), Yonghe Xia [ctb], Justin Silverman [ctb], Bradley Jones [ctb], Watal M. Iwasaki [ctb], Ruizhu Huang [ctb]

Initial release