Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

get_taxa_name

get_taxa_name

Description

get taxa name of a selected node (or tree if node=NULL) sorted by their position in plotting

Usage

get_taxa_name(tree_view = NULL, node = NULL)

Arguments

tree_view

tree view (i.e. the ggtree object). If tree_view is NULL, the last ggplot will be used.
node

internal node number to specify a clade. If NULL, using the whole tree

Details

This function extract an ordered vector of the tips from selected clade or the whole tree based on the ggtree() plot.

Value

ordered taxa name vector

Author(s)

Guangchuang Yu

Examples

tree <- rtree(30)
p <- ggtree(tree)
get_taxa_name(p)
ggtree

an R package for visualization of tree and annotation data

v2.4.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>), Yonghe Xia [ctb], Justin Silverman [ctb], Bradley Jones [ctb], Watal M. Iwasaki [ctb], Ruizhu Huang [ctb]
Initial release

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.