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gheatmap

gheatmap

Description

append a heatmap of a matrix to right side of phylogenetic tree

Usage

gheatmap(
  p,
  data,
  offset = 0,
  width = 1,
  low = "green",
  high = "red",
  color = "white",
  colnames = TRUE,
  colnames_position = "bottom",
  colnames_angle = 0,
  colnames_level = NULL,
  colnames_offset_x = 0,
  colnames_offset_y = 0,
  font.size = 4,
  family = "",
  hjust = 0.5,
  legend_title = "value"
)

Arguments

p

tree view
data

matrix or data.frame
offset

offset of heatmap to tree
width

total width of heatmap, compare to width of tree
low

color of lowest value
high

color of highest value
color

color of heatmap cell border
colnames

logical, add matrix colnames or not
colnames_position

one of 'bottom' or 'top'
colnames_angle

angle of column names
colnames_level

levels of colnames
colnames_offset_x

x offset for column names
colnames_offset_y

y offset for column names
font.size

font size of matrix colnames
family

font of matrix colnames
hjust

hjust for column names (0: align left, 0.5: align center, 1: align righ)
legend_title

title of fill legend

Value

tree view

Author(s)

Guangchuang Yu

ggtree

an R package for visualization of tree and annotation data

v2.4.2
Artistic-2.0
Authors
Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>), Yonghe Xia [ctb], Justin Silverman [ctb], Bradley Jones [ctb], Watal M. Iwasaki [ctb], Ruizhu Huang [ctb]
Initial release

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