hdf5r

Class for representing HDF5 attributes

Class for representing HDF5 datasets

Class for interacting with HDF5 files.

Open an HDF5 file

Wrap an HDF5-id in the appropriate class

Class for representing HDF5 groups

Retrieve object from a group of file

Class for HDF5 property lists.

Class for HDF5 property list for attribute creation

Class for HDF5 property list classes (not HDF5 property lists)

Class for HDF5 property list for dataset access

Class for HDF5 property list for dataset creation

Class for HDF5 property list for dataset transfer

Class for default values for HDF5 property lists.

Class for HDF5 property list for file creation

Class for HDF5 property list for file creation

Class for HDF5 property list for link access

Class for HDF5 property list for link creation

Class for HDF5 property list for object copying

Class for HDF5 property list for object creation

Create an \code\linkH5P out of an id

Class for HDF5 Reference datatypes.

Class for HDF5 dataset-region references.

Class for HDF5 Object-references.

Various functions for H5R objects

Base class that tracks the ids and allows for closing an id

Class for representing HDF5 spaces

Class for HDF5 default space

Selecting and assigning subsets of HDF5-Spaces and HDF5-Datasets

Class for HDF5 datatypes.

Class for HDF5 array datatypes.

Class for HDF5 complex datatypes

Class for HDF5 compound datatypes.

Class for HDF5 enumeration datatypes.

Class for HDF5 floating point datatypes.

Class for HDF5 integer-datatypes.

Class for HDF5 logical datatypes. This is an enum with the 3 values FALSE, TRUE and NA mapped on values 0, 1 and 2. Is transparently mapped onto a logical variable

Class for HDF5 string datatypes.

Class for HDF5 variable-length datatypes.

Extract HDF5-ids and return as a vector

Turn ids into H5T objects

Closes any HDF5 id using the appropriate library function

Low-level conversion functions from R to HDF5 and vice versa

Apply a selection to a space

Can arguments be interpreted as a scalar?

Evaluate if the arguments are regular for hyperslab use

Cycle through n-dimensional array indices

Reorder an array

Convert a double or integer to hex

Check argument for known functions that encode a hyperslab

Cleaning result of internal R_H5ls function

Round-trip of converting data to HDF5 and back to R

Create an empty R-object according to a given HDF5 datatype

Reshuffle the input as needed - see args_regularity_evaluation

Compare the ids of objects

Expand list of points for each dimension into a matrix of all combinations

Set the correct dimension attribute for an object

Create an extended factor

Various functions for factor_ext objects

Flatten a nested data.frame

Get the id of an H5RefClass

Guess the dimension of a chunk

Guess the HDF5 datatype of an R object

Guess the dataspace of an object

Wrapper functions to provide an h5 compatible interface.

Interface for HDF5 attributes

All constants used in HDF5

Trigger the HDF5 garbage collection

These are all types that are used in HDF5

Return the version of the HDF5-API

hdf5r: A package to provide an interface to hdf5 from R

Single hyperslab dimension to explicit vector

Check if a file is an HDF5 file

List Groups and Datasets in object

Match arguments in a call to function and add default values

Get the names of the items in the group or at the / root of the file

Print a data frame with extended factor objects

Print attributes

Print the class and ID

Print listing

Turn regulation evaluation into a selection for a space object

Get the id of a type of the dataset

Select multiple hyperslabs in a space

Convert a text description to a datatype

Retrieving a copy of a type