httk: augment.table – R documentation

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augment.table

Add a paramter value to the chem.physical_and_invitro.data table

Description

This internal function is used by add_chemtable to add a single new parameter to the table of chemical parameters. It should not be typically used from the command line.

Usage

augment.table(
  this.table,
  this.CAS,
  compound.name = NULL,
  this.property,
  value,
  species = NULL,
  reference,
  overwrite = FALSE,
  sig.fig = 4,
  clint.pvalue.overwrite = TRUE,
  allow.na = FALSE
)

Arguments

`this.table`	Object of class data.frame containing one row per chemical.
`this.CAS`	The Chemical Abstracts Service registry number (CAS-RN) correponding to the parameter value
`compound.name`	A name associated with the chemical (defaults to NULL)
`this.property`	The property being added/modified.
`value`	The value being assigned to this.property.
`species`	This is the species for the data in the new table. This may be omitted if a column in data.list gives the species value for each chemical or if the data are not species-specific (e.g., MW).
`reference`	This is the reference for the data in the new table. This may be omitted if a column in data.list gives the reference value for each chemical.
`overwrite`	If overwrite=TRUE then data in current.table will be replaced by any data in new.table that is for the same chemical and property. If overwrite=FALSE (DEFAULT) then new data for the same chemical and property are ignored. Funbound.plasma values of 0 (below limit of detection) are overwritten either way.
`sig.fig`	Sets the number of significant figures stored (defaults to 4)
`clint.pvalue.overwrite`	If TRUE then the Cl_int p-value is set to NA when the Cl_int value is changed unless a new p-value is provided. (defaults to TRUE)
`allow.na`	If TRUE (default is FALSE) then NA values are written to the table, otherwise they are ignored.

Value

data.frame

A new data.frame containing the data in current.table augmented by new.table

Author(s)

John Wambaugh

httk

High-Throughput Toxicokinetics

v2.0.4

GPL-3

Authors

John Wambaugh [aut, cre] (<https://orcid.org/0000-0002-4024-534X>), Robert Pearce [aut] (<https://orcid.org/0000-0003-3168-4049>), Caroline Ring [aut] (<https://orcid.org/0000-0002-0463-1251>), Greg Honda [aut] (<https://orcid.org/0000-0001-7713-9850>), Mark Sfeir [aut], Matt Linakis [aut] (<https://orcid.org/0000-0003-0526-2395>), Sarah Davidson [aut] (<https://orcid.org/0000-0002-2891-9380>), Miyuki Breen [ctb] (<https://orcid.org/0000-0001-8511-4653>), Shannon Bell [ctb], Xiaoqing Chang [ctb] (<https://orcid.org/0000-0003-0752-1848>), Jimena Davis [ctb], James Sluka [ctb] (<https://orcid.org/0000-0002-5901-1404>), Nisha Sipes [ctb] (<https://orcid.org/0000-0003-4203-6426>), Barbara Wetmore [ctb] (<https://orcid.org/0000-0002-6878-5348>), Woodrow Setzer [ctb] (<https://orcid.org/0000-0002-6709-9186>)

Initial release

2021-05-07