Helper function to harmonize treatment of file import results
This function provides two ways of post-processing imported spectra:
.fileio.optional(
spc,
filename,
...,
file.remove.emptyspc = hy.getOption("file.remove.emptyspc"),
file.keep.name = hy.getOption("file.keep.name"),
tolerance = hy.getOption("tolerance")
)spc |
hyperSpec object for file import post-processing |
filename |
filename(s) to become extra data column of 'spc' |
... |
(ignored) |
file.remove.emptyspc |
should empty (all 'NA' or all '0') spectra be removed? |
file.keep.name |
should file names be kept and put into 'spc$filename'? |
tolerance |
intensities in +/- 'tolerance' are considered '0' for 'file.remove.emptyspc = TRUE' |
- optionally remove empty spectra (some spectrograph software will produce empty spectra when measurements are cancelled) - optionally keep the filenames in column 'spc$filename'
The desired overall behavior can be set by options via [hy.setOptions()]. All file import filters should call '.fileio.optional()' to ensure the same behavior.
hyperSpec object
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