Example network-based kernel matrix for pathway hsa04020.
An example of a kernel object.
data(net.kernel.hsa04020)
An object of class kernel and type 'network' for the pathway
hsa04020.
specifies which kernel function was used to calculate the kernel
includes the kernel matrix calculated for the pathway
includes the pathway object of the pathway, for which
the kernel matrix was calculated
simulated data and Ensembl extract
data(net.kernel.hsa04020) # derivation data(gwas) data(hsa04020) net_kernel <- calc_kernel(gwas, hsa04020, knots=NULL, type='net', calculation='cpu') # are the value differences smaller than machine epsilon? all(abs(net.kernel.hsa04020@kernel - net_kernel@kernel) < sqrt(.Machine$double.eps))
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