longitudinalData: plotTrajMeans – R documentation

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plotTrajMeans

~ Function: plotTrajMeans for LongData ~

Description

Plot the LongData or LongData3d optionnaly relatively to a Partition. For joint trajectories, one graphe for each variable trajectory is displayed.

Usage

plotTrajMeans(x, y, parTraj=parTRAJ(), parMean=parMEAN(),...)

Arguments

`x`	`[LongData]` or `[LongData3d]`: Object containing the trajectories to plot.
`y`	`[numeric]`: `Partition` that will be use to plot the object. If `y` is missing, a `Partition` with a single cluster is considered.
`parTraj`	`[ParLongData]`: Set the graphical parameters used to plot the trajectories. See `ParLongData` and examples for details.
`parMean`	`[ParLongData]`: Set the graphical parameters used to plot the mean trajectories of each clusters (only when `y` is non missing). See `ParLongData` and examples for details.

...

Arguments to be passed to methods, such as graphical parameters.

Details

Plot either a LongData, or each variable of a LongData3d optionnaly according to the Partition define by y.

Graphical option concerning the individual trajectory (col, type, pch and xlab) can be change using parTraj. Graphical option concerning the cluster mean trajectory (col, type, pch, pchPeriod and cex) can be change using parMean. For more detail on parTraj and parMean, see object of class ParLongData.

Author

Christophe Genolini
1. UMR U1027, INSERM, Université Paul Sabatier / Toulouse III / France
2. CeRSM, EA 2931, UFR STAPS, Université de Paris Ouest-Nanterre-La Défense / Nanterre / France

References

[1] C. Genolini and B. Falissard
"KmL: k-means for longitudinal data"
Computational Statistics, vol 25(2), pp 317-328, 2010

[2] C. Genolini and B. Falissard
"KmL: A package to cluster longitudinal data"
Computer Methods and Programs in Biomedicine, 104, pp e112-121, 2011

Examples

##################
### Construction of the data
data(artificialLongData)
ld <- longData(artificialJointLongData)
part <- partition(rep(1:3,each=50))

### Basic plotting
plotTrajMeans(ld)
plotTrajMeans(ld,part,xlab="Time")


##################
### Changing graphical parameters 'par'

### No letters on the mean trajectories
plotTrajMeans(ld,part,parMean=parMEAN(type="l"))

### Only one letter on the mean trajectories
plotTrajMeans(ld,part,parMean=parMEAN(pchPeriod=Inf))

### Color individual according to its clusters (col="clusters")
plotTrajMeans(ld,part,parTraj=parTRAJ(col="clusters"))

### Mean without individual
plotTrajMeans(ld,part,parTraj=parTRAJ(type="n"))


### No mean trajectories (type="n")
### Color individual according to its clusters (col="clusters")
plotTrajMeans(ld,part,parTraj=parTRAJ(col="clusters"),parMean=parMEAN(type="n"))

### Only few trajectories
plotTrajMeans(ld,part,nbSample=10,parTraj=parTRAJ(col='clusters'),parMean=parMEAN(type="n"))


##################
### single variable trajectory

data(artificialLongData)
ld2 <- longData(artificialLongData)
part2 <- partition(rep(1:4,each=50))
plotTrajMeans(ld2)
plotTrajMeans(ld2,part2)

longitudinalData

Longitudinal Data

v2.4.1

GPL (>= 2)

Authors

Christophe Genolini [cre, aut], Bruno Falissard [ctb], Dai Fang [ctb], Luke Tierney [ctb]

Initial release

2016-02-02