maftools: oncostrip – R documentation

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oncostrip

draw an oncostrip similar to cBioportal oncoprinter output.

Description

draw an oncostrip similar to cBioportal oncoprinter output.

Usage

oncostrip(maf = NULL, ...)

Arguments

`maf`	an `MAF` object generated by `read.maf`
`...`	arguments passed `oncoplot`

Details

This is just a wrapper around oncoplot with drawRowBar and drawColBar set to FALSE

Value

None.

Examples

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
dev.new()
oncostrip(maf = laml, genes = c('NPM1', 'RUNX1'))

maftools

Summarize, Analyze and Visualize MAF Files

v2.6.05

MIT + file LICENSE

Authors

Anand Mayakonda [aut, cre] (<https://orcid.org/0000-0003-1162-687X>)

Initial release

2015-12-14