maftools: getClinicalData – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

getClinicalData

extract annotations from MAF object

extract annotations from MAF object

getClinicalData(x)

## S4 method for signature 'MAF'
getClinicalData(x)

`x`	An object of class MAF

annotations associated with samples in MAF

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
getClinicalData(x = laml)

Summarize, Analyze and Visualize MAF Files

v2.6.05

MIT + file LICENSE

Authors

Anand Mayakonda [aut, cre] (<https://orcid.org/0000-0003-1162-687X>)

Initial release

2015-12-14