Minimum effective sample size required for stable estimation as described in Vats et al. (2015).
The function calculates the minimum effective sample size required for a specified relative tolerance level. This function can also calculate the relative precision in estimation for a given estimated effective sample size.
minESS(p, alpha = .05, eps = .05, ess = NULL)
p |
dimension of the estimation problem. |
alpha |
confidence level |
eps |
tolerance level. The |
ess |
Estimated effective sample size. Usually the output value from |
The minimum effective samples required when estimating a vector of length p, with 100(1-α)% confidence and tolerance of ε is
\mbox{mESS} ≥q \frac{2^{2/p} π}{(p Γ(p/2))^{2/p}} \frac{χ^2_{1-α, p}}{ε^2}
The above equality can also be used to get ε from an already obtained estimate of mESS.
By default function returns the minimum effective sample required for a given eps
tolerance. If ess
is specified, then the value returned is the eps
corresponding to that ess
.
Gong, L., and Flegal, J. M. A practical sequential stopping rule for high-dimensional Markov chain Monte Carlo. Journal of Computational and Graphical Statistics (to appear).
Vats, D., Flegal, J. M., and, Jones, G. L Multivariate Output Analysis for Markov chain Monte Carlo, arXiv preprint arXiv:1512.07713 (2015).
multiESS
, which calculates multivariate effective sample size using a Markov chain and a function g.
ess
which calculates univariate effective sample size using a Markov chain and a function g.
minESS(p = 5)
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