Compute network bursts for a list of MEA recordings.
For a list of MEA recordings, ususally from the same plate at different time point,This function detects and report network burst features at the well level.
calculate_network_bursts(s,sigmas, min_electrodes, local_region_min_nae)
s |
A list of MEA recordings, typically from the same MEA plate at different time point. |
sigmas |
The window size used to generate network bursts. |
min_electrodes |
Minimum number of electrodes to call a network burst |
local_region_min_nae |
Indicates if an adaptive threthold method should be used. |
Returns an object containing summary, nb_all, nb_features, result, and nb_features_merged.
summary |
brief summary |
nb_all |
Each well has 3 data frames with nb times, one for each smoothing window |
nb_features |
a list containing a data-frame for each DIV analyzed |
result |
for each DIV analyzed, information on the DIV, times of nb for each well and each smoothing window |
nb_features_merged |
data frame with nb related features averaged across DIVs |
Quanli Wang
Add reference to Yi-Fan Lu's paper when it is in press.
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