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calculate_network_spikes

Compute the netwrok spikes statistics from spike lists.


Description

Taken a spike list object for a set of electrodes, this function searches network spikes returns a list of all network spikes.

Usage

calculate_network_spikes(e, sur = 100,ns_n, ns_t)

Arguments

e

A spike list object for a set of electrodes.

sur

This parameter is related to the number of datapoints to be used in summmarizing mean network spikes, which will be only used for network spike diagnostics. The default value of 100 will usually be sufficient.

ns_t

global variable, time window of a network spike

ns_n

global variable, minimum number of coincident electrodes

Value

Returns a list of object, containing network spikes.

wells

A list of wells that network spikes were found and defined.

ns_all

A list of network spikes computed from the spike lists.

well_layout

The plate/well layout identified by the function.

References

Need to find the paper describe this method.


meaRtools

Micro-Electro Array (MEA) Analysis

v1.0.4
GPL (>= 3)
Authors
Quanli Wang [aut, ctb], Sahar Gelfman [aut, ctb, cre], Diana Hall [aut, ctb], Ryan Dhindsa [aut, ctb], Matt Halvorsen [aut, ctb], Ellese Cotterill [aut, ctb], Tom Edinburgh [aut, ctb], Stephen J. Eglen [aut, ctb, ths]
Initial release
2018-7-1

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