Compute the mean STTC averaged across all pairwise electrodes in well
Compute the mean STTC averaged across all pairwise electrodes in well
compute_mean_sttc_by_well(s, dt = 0.05, beg = NULL, end = NULL)
s |
structure storing the well information |
dt |
Time window for STTC (default = 0.05 seconds) |
beg |
Start time in seconds (defaults to start of recording) |
end |
End time in seconds (defaults to end of recording) |
For each pair of electrodes, we calculate the STTC. We then take the mean of these pairs, excluding autocorrelations. If a well has one (or no) electrodes, the value returned for that well is NULL.
Warning: taking the mean over a well is useful only if you do not suspect distance-dependent correlations in your firing. (For activity like retinal waves, we find that correlations are strongly dependent on the distance separating electrodes.)
A vector giving the mean of all pairwise STTCs on each well.
Stephen Eglen
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