get_experimental_log_file
Extract data from experimental log file: a csv file with columns for well, treatment, dose, size and units.
get_experimental_log_file(file, master_chem_file = master_chem_file)
file |
spike-list csv file, one of the possible plate recording file formats available from Axion. Format: one spike and corresponding electrode name per row. See Axion biosystems website for details. |
master_chem_file |
A csv file containing the following columns: "Project", "Experiment.Date", "Plate.SN", "DIV", "Well", "Treatment", "Size", "Dose", and "Units". Empty wells must still be represented in file. If column is irrelavent to a given data set, then 'NA' or blank is sufficient. "Project" columm must match the first character string preceeding "_" in spike-list file name. e.g. exampleRecording_1012016_plate1_DIV1_spike_list.csv". Similarly, "Experiment.Data" and "Plate.SN" must match second and third character strings as separated by "_" in spike-list file name. "DIV" column does not need to be matched. |
list containing character vector of experimental log information.
well |
well name e.g. "A4"" |
treatment |
treatment on well e.g. 'WT' |
size |
size information of chemical treatment |
dose |
dose information for treatment |
units |
units of dosage e.g. uL/g |
See http://www.axionbiosystems.com/products/software/ for details on spike-list csv file format
temp_path=tempdir()
master_chem_file<-paste0( temp_path,"/data",
"/exampleRecording_1012016_plate1_expLog.csv" )
spike_list_file<-paste0( temp_path,"/data",
"/exampleRecording_1012016_plate1_DIV1_spike_list.csv" )
plate.data<-getxperimental.log.file( file=spike.list.file, master_chem_file = master_chem_file )Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.