mets

Augmentation for Binomial regression based on stratified NPMLE Cif (Aalen-Johansen)

Wild bootstrap for Cox PH regression

Clayton-Oakes model with piece-wise constant hazards

Derivatives of the bivariate normal cumulative distribution function

Relative risk for additive gamma model

Augmentation for Fine-Gray model based on stratified NPMLE Cif (Aalen-Johansen)

Additive Random effects model for competing risks data for polygenetic modelling

Simple linear spline

Aalen frailty model

Convert to timereg object

rate of CRBSI for HPN patients of Copenhagen

rate of Occlusion/Thrombosis complication for catheter of HPN patients of Copenhagen

rate of Mechanical (hole/defect) complication for catheter of HPN patients of Copenhagen

Plotting the baslines of stratified Cox

Estimation of concordance in bivariate competing risks data

Fits Clayton-Oakes or bivariate Plackett (OR) models for binary data using marginals that are on logistic form. If clusters contain more than two times, the algoritm uses a compososite likelihood based on all pairwise bivariate models.

Binomial Regression for censored competing risks data

Bivariate Probit model

Block sampling

Liability model for twin data

Estimates the casewise concordance based on Concordance and marginal estimate using prodlim but no testing

Estimates the casewise concordance based on Concordance and marginal estimate using timereg and performs test for independence

Cumulative incidence with robust standard errors

CIF regression

Finds subjects related to same cluster

Concordance Computes concordance and casewise concordance

Cross-odds-ratio, OR or RR risk regression for competing risks

Counts the number of previous events of two types for recurrent events processes

Estimation of covariance for bivariate recurrent events with terminal event

aggregating for for data frames

Calculate summary statistics grouped by

summary, tables, and correlations for data frames

Cutting, sorting, rm (removing), rename for data frames

Dermal ridges data (families)

Dermal ridges data (monozygotic twins)

Split a data set and run function

Split a data set and run function from timereg and aggregate

Lag operator

Double CIF Fine-Gray model with two causes

list, head, print, tail

Rate for leaving HPN program for patients of Copenhagen

Regression for data frames with dutility call

relev levels for data frames

Sort data frame

Simple linear spline

tables for data frames

Transform that allows condition

Fits two-stage binomial for describing depdendence in binomial data using marginals that are on logistic form using the binomial.twostage funcion, but call is different and easier and the data manipulation is build into the function. Useful in particular for family design data.

Wrapper for easy fitting of Clayton-Oakes or bivariate Plackett models for bivariate survival data

Extract survival estimates from lifetable analysis

Finds all pairs within a cluster (family)

Finds all pairs within a cluster (famly) with the proband (case/control)

Fast approximation

Fast pattern

Fast reshape

ghaplos haplo-types for subjects of haploX data

GOF for Cox PH regression

Stratified baseline graphical GOF test for Cox covariates in PH regression

GOF for Cox covariates in PH regression

GOF for Cox covariates in PH regression

hapfreqs data set

Discrete time to event haplo type analysis

haploX covariates and response for haplo survival discrete survival

For internal use

Discrete time to event interval censored data

Inverse Probability of Censoring Weights

Inverse Probability of Censoring Weights

Kaplan-Meier with robust standard errors

Life-course plot

Life table

Proportional odds survival model

Menarche data set

Analysis of Multivariate Events

Set global options for mets

Migraine data

Multinomial regression based on phreg regression

Multivariate Cumulative Incidence Function example data set

np data set

Fast Cox PH regression

Fast Cox PH regression and calculations done in R to make play and adjustments easy

plack Computes concordance for or.cif based model, that is Plackett random effects model

Multivariate normal distribution function

Predictions from proportional hazards model

prints Concordance test

Estimation of probability of more that k events for recurrent events process

Prostate data set

Random effects model for competing risks data

Fast recurrent marginal mean when death is possible

Piecewise constant hazard distribution

Simulate from the Aalen Frailty model

Simulate from the Clayton-Oakes frailty model

Simulate from the Clayton-Oakes frailty model

Simulation of illness-death model

Simulation of recurrent events data based on cumulative hazards

Simulation of recurrent events data based on cumulative hazards II

Simulation of recurrent events data based on cumulative hazards: Two-stage model

Summary for dependence models for competing risks

Survival model for multivariate survival data

Twostage survival model for multivariate survival data

Concordance test Compares two concordance estimates

Estimate parameters from odds-ratio

ttpd discrete survival data on interval form

Estimation of twostage model with cluster truncation in bivariate situation

BMI data set

Classic twin model for quantitative traits

Simulate twin data

Stutter data set

Twostage survival model fitted by pseudo MLE