Data sets for use in examples
This data set contains several files with various objects used in examples
in some of the functions in the micropan package.
data(xmpl.bdist) data(xmpl.bclst) data(xmpl.panmat)
xmpl.bdist is a tibble with 4 columns holding all
BLAST distances between pairs of proteins in an example with 10 small genomes.
xmpl.bclst is a clustering vector of all proteins in the genomes from xmpl.bdist.
xmpl.panmat is a pan-matrix with 10 rows and 1210 columns computed from xmpl.bclst.
Lars Snipen and Kristian Hovde Liland.
# BLAST distances, only the first 20 are displayed data(xmpl.bdist) head(xmpl.bdist) # Clustering vector data(xmpl.bclst) print(xmpl.bclst[1:30]) # Pan-matrix data(xmpl.panmat) head(xmpl.panmat)
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