msm

Coxian phase-type distribution with two phases

Matrix exponential

Aortic aneurysm progression data

Bootstrap resampling for multi-state models

Bronchiolitis obliterans syndrome after lung transplants

Heart transplant monitoring data

Developer documentation: censoring model object

Extract model coefficients

Calculate crude initial values for transition intensities

The delta method

Criteria for comparing two multi-state models with nested state spaces

Developer documentation: model for covariates on misclassification probabilities

Expected first passage time

Misclassification probability matrix

Developer documentation: misclassification model structure object

FEV1 measurements from lung transplant recipients

Calculate tables of hazard ratios for covariates on transition intensities

Hidden Markov model constructors

Multivariate hidden Markov models

Developer documentation: hidden Markov model structure object

Extract model log-likelihood

Likelihood ratio test

Measurement error distributions

Extract original data from msm objects.

Multi-state Markov and hidden Markov models in continuous time

Extract msm model parameter estimates in compact format

Fitted msm model objects

Convert data for ‘msm’ to data for ‘survival’, ‘mstate’ or ‘flexsurv’ analysis

Calculate tables of odds ratios for covariates on misclassification probabilities

Developer documentation: internal msm parameters object

Pearson-type goodness-of-fit test

Exponential distribution with piecewise-constant rate

Parameters of phase-type models in mixture form

Plots of multi-state models

Plot of observed and expected prevalences

Plot empirical and fitted survival curves

Kaplan Meier estimates of incidence

Transition probability matrix

Transition probability matrix for processes with piecewise-constant intensities

Probability of each state being next

Passage probabilities

Tables of observed and expected prevalences

Print a fitted msm model object

Print a fitted msm model object

Psoriatic arthritis data

Developer documentation: model for covariates on transition intensities

Generic function to find quantiles of a distribution

Transition intensity matrix

Developer documentation: transition model structure object

Estimated ratio of transition intensities

Convert data stored in msm object to old format

Score residuals

Simulate one individual trajectory from a continuous-time Markov model

Simulate from a Markov model fitted using msm

Simulate multiple trajectories from a multi-state Markov model with arbitrary observation times

Mean sojourn times from a multi-state model

Table of transitions

Summarise a fitted multi-state model

Explore the likelihood surface

Truncated Normal distribution

Total length of stay, or expected number of visits

Transient and absorbing states

updatepars.msm

Calculate the probabilities of underlying states and the most likely path through them