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mzR

parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

Functions (8)

copyWriteMSData

Write MS spectrum data to a MS file copying metadata from the originating file

isolationWindow-methods

Returns the ion selection isolation window

metadata

Access the metadata from an mzR object.

mzR-class

Class mzR and sub-classes

openMSfile

Create and check mzR objects from netCDF, mzXML, mzData or mzML files.

peaks

Access the raw data from an mzR object.

pwiz-version

Get the version number of pwiz backend.

writeMSData

Write MS spectrum data to an MS file

mzR

parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)

v2.24.1
Artistic-2.0
Authors
Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer
Initial release

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