Convert DICOM Header to NIfTI
A subset of header information from DICOM is placed into NIfTI-1 format.
dicom2nifti(dcm, datatype = 4, units = c("mm", "sec"),
rescale = FALSE, reslice = TRUE, qform = TRUE, sform = TRUE,
DIM = 3, descrip = "SeriesDescription", aux.file = NULL, ...)dcm |
DICOM object containing both header and image information. |
datatype |
is an integer that denotes the type of data contained in
each voxel. See |
units |
Spatial and temporal units for |
rescale |
Should slope and intercept parameters be extracted from the DICOM headers and saved? |
reslice |
Logical variable (default = |
qform |
Logical variable (default = |
sform |
Logical variable (default = |
DIM |
The dimension of the array to be used (default = 3D). |
descrip |
DICOM header field(s) to be included in the |
aux.file |
Character string to be included in the |
... |
Arguments to be passed to |
See the references.
An object of class nifti.
Brandon Whitcher bwhitcher@gmail.com
Digital Imaging and Communications in Medicine (DICOM)
http://medical.nema.org
## Not run:
dcmList <- dicomSeparate(system.file("hk-40", package="oro.dicom"))
require("oro.nifti")
dcmNifti <- dicom2nifti(dcmList, datatype=4, mode="integer")
qform(dcmNifti)
sform(dcmNifti)
image(dcmNifti)
orthographic(dcmNifti)
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.