S3 methods for class 'linkres'.
Functions for printing, summarizing and plotting the results of a linkage analysis.
## S3 method for class 'linkres' print(x, ...) ## S3 method for class 'linkres' summary(object, ...) ## S3 method for class 'linkres' as.data.frame(x, ..., sort = TRUE) peakSummary(x, threshold, width = 1, physmap = NULL) ## S3 method for class 'linkres' plot(x, chrom = NULL, ylim = NULL, ...)
x, object |
|
... |
further arguments. |
sort |
a logical, indicating if the data frame should be sorted according to map position. |
threshold |
a single numeric. A peak is defined as a regions of at
least |
width |
a single numeric. |
physmap |
a matrix or data frame with three columns: Marker name, chromosome and physical position. This argument is optional. |
chrom |
NULL, or a numeric containing chromosome numbers. In the latter case only results for the markers on the indicated chromosomes will be plotted. |
ylim |
NULL, or a numeric of length 2: to be passed on to plot.default. |
Magnus Dehli Vigeland
x = linkdat(toyped, model=1) lods = lod(x, theta='max') summary(lods) as.data.frame(lods)
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