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toyped

Toy pedigree for linkage analysis


Description

Toy pedigree with 4 individuals typed at a single SNP marker. Individual 1 is missing one allele.

Usage

toyped

Format

A data frame with 4 rows and 8 columns

Details

The format is standard LINKAGE (pre-makeped) format, with columns as follows:

  • FAMID. Family ID

  • ID. Individual ID

  • FID. Father ID

  • MID. Mother ID

  • SEX. Gender (male=1, female=2)

  • AFF. Affection status (unaffected=1, affected=2, unkonwn=0)

  • M_A1. First allele of marker 1

  • M_A2. Second allele of marker 1

Examples

toyped
linkdat(toyped)

paramlink

Parametric Linkage and Other Pedigree Analysis in R

v1.1-2
GPL (>= 2)
Authors
Magnus Dehli Vigeland [aut, cre], Thore Egeland [ctb], Guro Doerum [ctb]
Initial release
2018-01-05

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