Check for Mendelian errors
Check marker data for Mendelian inconsistencies
mendelianCheck(x, remove = FALSE, verbose = !remove)
x |
a |
remove |
a logical. If FALSE, the function returns the indices of
markers found to incorrect. If TRUE, a new |
verbose |
a logical. If TRUE, details of the markers failing the tests are shown. |
A numeric containing the indices of the markers
that did not pass all tests, or (if remove = TRUE) a new ped
object where the failing markers are removed.
Magnus Dehli Vigeland
x = nuclearPed(3) # Add a SNP with Mendelian error m = marker(x, '1' = 1, '2' = 1, '3' = 1:2) x = setMarkers(x, m) mendelianCheck(x)
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