Compare Two Haplotype Networks
This function compares two haplotype networks and returns either
TRUE or a description of the differences.
## S3 method for class 'haploNet' all.equal(target, current, use.steps = TRUE, ...)
target, current |
two objects of class |
use.steps |
a logical value: whether to consider the number of steps (or length) in each link. |
... |
(unused). |
This function should return TRUE if the two networks are
identical even if the links are ordered differently. In all other
situations, a vector of character strings describing the differences
is returned.
As usual with the all.equal function, this cannot
be used directly to return a TRUE/FALSE value (see
examples).
either a logical value (TRUE), or a vector of mode character.
Emmanuel Paradis
data(woodmouse) d <- dist.dna(woodmouse, "n") nt1 <- mst(d) nt2 <- msn(d) (comp <- all.equal(nt1, nt2)) # clearly different ## how to use all.equal to return TRUE/FALSE: isTRUE(comp) # FALSE
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