phytools: export.as.xml – R documentation

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export.as.xml

Export trees & data in XML format

This function exports trees & character data in XML format.

export.as.xml(file, trees, X)

`file`	filename for export.
`trees`	a phylogenetic tree or trees in `"phylo"` or `"multiPhylo"` format.
`X`	a matrix of class `"DNAbin"` or a matrix with discretely valued non-DNA character data.

Can be used to create input file for the program SIMMAP v1.5 (Bollback 2006).

A file.

Bollback, J. P. (2006) Stochastic character mapping of discrete traits on phylogenies. BMC Bioinformatics, 7, 88.

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.