phytools: nodelabels.cophylo – R documentation

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phytools

nodelabels.cophylo

Add labels to a plotted "cophylo" object

Description

This function adds node, edge, or tip labels to the plotted trees of a "cophylo" object.

Usage

nodelabels.cophylo(..., which=c("left","right"))
edgelabels.cophylo(..., which=c("left","right"))
tiplabels.cophylo(..., which=c("left","right"))

Arguments

`...`	arguments to be passed to `nodelabels`, `edgelabels`, or `tiplabels`.
`which`	argument indicated which of the two plotted trees (the `"left"` or `"right"` tree) to be used.

Details

Note that the order of tips, edges, and nodes may be different in the object of class "cophylo" than they are in the original input trees, particularly if cophylo(...,rotate=TRUE) was used.

Author(s)

Liam Revell liam.revell@umb.edu

References

Paradis, E., J. Claude, and K. Strimmer (2004) APE: Analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.