phytools: plotTree.datamatrix – R documentation

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phytools

plotTree.datamatrix

Plot a tree with a discrete character data matrix at the tips

Description

Function plots a phylogeny next to a matrix of discrete character data.

Usage

plotTree.datamatrix(tree, X, ...)

Arguments

`tree`	an object of class `"phylo"`.
`X`	a data frame with columns as factors.
`...`	optional arguments.

Value

Invisibly returns a list containing the font size, a list of the colors used for each column of the plotted data matrix, and the x-coordinate of the rightmost edge of the matrix.

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.