phytools: plotTree.errorbars – R documentation

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plotTree.errorbars

Plot a tree with error bars around divergence dates

Plots a tree with error bars around divergence times (nodes).

plotTree.errorbars(tree, CI, ...)

`tree`	an object of class `"phylo"`.
`CI`	confidence intervals around internal nodes of the tree, measured in time since the present.
`...`	optional arguments to be passed to `plotTree`.

The matrix CI show contain (in rows) the lower & upper confidence bounds in time since the present.

Optional arguments specific to the error bar plot include gridlines, bar.lwd,cex (for the points plotted at nodes), and bar.col.

Plots a tree with error bars around internal nodes..

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.