phytools: reorderSimmap – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

reorderSimmap

Reorder edges of a simmap tree

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

reorderSimmap(tree, order="cladewise", index.only=FALSE, ...)

Arguments

`tree`	a modified object of class `"phylo"`.
`order`	either `"cladewise"` or `"pruningwise"` (see `reorder.phylo`).
`index.only`	logical value indicating whether only an index should be returned.
`...`	other arguments.

Value

A modified object of class "phylo".

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.