phytools: setMap – R documentation

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phytools

setMap

Set color map for various phylogenetic objects of classes

Description

Function to change the color map (ramp) in an object of class "contMap", "densityMap", or "phyloScattergram".

Usage

setMap(x, ...)
## S3 method for class 'contMap'
setMap(x, ...)
## S3 method for class 'densityMap'
setMap(x, ...)
## S3 method for class 'phyloScattergram'
setMap(x, ...)

Arguments

`x`	an object of class `"contMap"`, `"densityMap"`, or `"phyloScattergram"`.
`...`	arguments to be passed to `colorRampPalette`. Also, the argument `invert` which (if `invert=TRUE`) will just flip the current color ramp.

Value

An object of class "contMap", "densityMap", or "phyloScattergram".

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

Revell, L. J. 2013. Two new graphical methods for mapping trait evolution on phylogenies. Methods in Ecology and Evolution, 4, 754-759.