poems: population_results – R documentation

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population_results

Nested functions for initializing, calculating and collecting population simulator results.

Modular functions for the population simulator for initializing, calculating and collecting simulator results.

population_results(
  replicates,
  time_steps,
  coordinates,
  initial_abundance,
  results_selection = NULL,
  result_stages = NULL
)

`replicates`	Number of replicate simulation runs.
`time_steps`	Number of simulation time steps.
`coordinates`	Data frame (or matrix) of X-Y population coordinates.
`initial_abundance`	Matrix of initial abundances at each stage (in rows) for each population (in columns).
`results_selection`	List of results selection from: "abundance" (default), "ema", "extirpation", "extinction_location", "harvested", "occupancy"; "summarize" (default) or "replicate".
`result_stages`	Array of booleans or numeric (0, 1, 2, ...) for each stage to indicate which stages are included/combined (each unique digit > 0; optionally named) in the results (default is 1 for all stages).

List of result functions:

initialize_attributes = function()): Constructs and returns an initialized nested list for the selected result attributes.
initialize_replicate = function(results): Initializes and returns nested result attributes at the start of each replicate.
calculate_at_timestep = function(r, tm, stage_abundance, harvested, results): Appends and calculates (non-NULL) results and returns nested result attributes at the end of each time step (tm) within replicate (r).
finalize_attributes = function(results): Finalizes result calculations at the end of the simulation.

Pattern-Oriented Ensemble Modeling System

v1.0.1

GPL-3

Authors

Sean Haythorne [aut, cre], Damien Fordham [aut], Stuart Brown [aut], Jessie Buettel [aut], Barry Brook [aut]

Initial release