prioritizr: add_relative_targets – R documentation

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add_relative_targets

Add relative targets

Description

Set targets as a proportion (between 0 and 1) of the maximum level of representation of features in the study area. Please note that proportions are scaled according to the features' total abundances in the study area (including any locked out planning units, or planning units with NA cost data) using the feature_abundances() function.

Usage

add_relative_targets(x, targets)

## S4 method for signature 'ConservationProblem,numeric'
add_relative_targets(x, targets)

## S4 method for signature 'ConservationProblem,matrix'
add_relative_targets(x, targets)

## S4 method for signature 'ConservationProblem,character'
add_relative_targets(x, targets)

Arguments

`x`	`problem()` (i.e. `ConservationProblem`) object.
`targets`	Object that specifies the targets for each feature. See the Targets data format section for more information.

Details

Targets are used to specify the minimum amount or proportion of a feature's distribution that needs to be protected. Most conservation planning problems require targets with the exception of the maximum cover (see add_max_cover_objective()) and maximum utility (see add_max_utility_objective()) problems. Attempting to solve problems with objectives that require targets without specifying targets will throw an error.

For problems associated with multiple management zones, this function can be used to set targets that each pertain to a single feature and a single zone. To set targets which can be met through allocating different planning units to multiple zones, see the add_manual_targets() function. An example of a target that could be met through allocations to multiple zones might be where each management zone is expected to result in a different amount of a feature and the target requires that the total amount of the feature in all zones must exceed a certain threshold. In other words, the target does not require that any single zone secure a specific amount of the feature, but the total amount held in all zones must secure a specific amount. Thus the target could, potentially, be met through allocating all planning units to any specific management zone, or through allocating the planning units to different combinations of management zones.

Value

Object (i.e. ConservationProblem) with the targets added to it.

Targets data format

The targets for a problem can be specified using the following formats.

numeric: vector of target values for each feature. Additionally, for convenience, this type of argument can be a single value to assign the same target to each feature. Note that this type of argument cannot be used to specify targets for problems with multiple zones.
matrix: containing a target for each feature in each zone. Here, each row corresponds to a different feature in argument to x, each column corresponds to a different zone in argument to x, and each cell contains the target value for a given feature that the solution needs to secure in a given zone.
character: containing the names of fields (columns) in the feature data associated with the argument to x that contain targets. This type of argument can only be used when the feature data associated with x is a data.frame. This argument must contain a field (column) name for each zone.

Examples

# set seed for reproducibility
set.seed(500)

# load data
data(sim_pu_raster, sim_features)

# create base problem
p <- problem(sim_pu_raster, sim_features) %>%
     add_min_set_objective() %>%
     add_binary_decisions() %>%
     add_default_solver(verbose = FALSE)

# create problem with 10% targets
p1 <- p %>% add_relative_targets(0.1)

# create problem with varying targets for each feature
targets <- c(0.1, 0.2, 0.3, 0.4, 0.5)
p2 <- p %>% add_relative_targets(targets)
## Not run: 
# solve problem
s <- stack(solve(p1), solve(p2))

# plot solution
plot(s, main = c("10% targets", "varying targets"), axes = FALSE,
     box = FALSE)

## End(Not run)
# create a problem with multiple management zones
p3 <- problem(sim_pu_zones_stack, sim_features_zones) %>%
      add_min_set_objective() %>%
      add_binary_decisions() %>%
      add_default_solver(verbose = FALSE)

# create a problem with targets that specify an equal amount of each feature
# to be represented in each zone
p4_targets <- matrix(0.1, nrow = 5, ncol = 3,
                     dimnames = list(feature_names(sim_features_zones),
                                     zone_names(sim_features_zones)))
print(p4_targets)

p4 <- p3 %>% add_relative_targets(p4_targets)

# solve problem
## Not run: 
# solve problem
s4 <- solve(p4)

# plot solution (pixel values correspond to zone identifiers)
plot(category_layer(s4), main = c("equal targets"))

## End(Not run)
# create a problem with targets that require a varying amount of each
# feature to be represented in each zone
p5_targets <- matrix(runif(15, 0.01, 0.2), nrow = 5, ncol = 3,
                     dimnames = list(feature_names(sim_features_zones),
                                     zone_names(sim_features_zones)))
print(p5_targets)

p5 <- p3 %>% add_relative_targets(p4_targets)
# solve problem
## Not run: 
# solve problem
s5 <- solve(p5)

# plot solution (pixel values correspond to zone identifiers)
plot(category_layer(s5), main = c("varying targets"))

## End(Not run)

prioritizr

Systematic Conservation Prioritization in R

v7.0.1

GPL-3

Authors

Jeffrey O Hanson [aut] (<https://orcid.org/0000-0002-4716-6134>), Richard Schuster [aut, cre] (<https://orcid.org/0000-0003-3191-7869>), Nina Morrell [aut], Matthew Strimas-Mackey [aut] (<https://orcid.org/0000-0001-8929-7776>), Matthew E Watts [aut], Peter Arcese [aut] (<https://orcid.org/0000-0002-8097-482X>), Joseph Bennett [aut] (<https://orcid.org/0000-0002-3901-9513>), Hugh P Possingham [aut] (<https://orcid.org/0000-0001-7755-996X>)

Initial release