protti: fetch_chebi – R documentation

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fetch_chebi

Fetch ChEBI database information

Description

Fetches all information from the ChEBI database.

Usage

fetch_chebi(relation = FALSE)

Arguments

relation

a logical, if TRUE, ChEBI Ontology data will be returned instead the main compound data. This data can be used to check the relations of ChEBI ID's to eachother.

Value

A data frame that contains all information about each molecule in the ChEBI database. Only "3-star" observations are included in the result. These are entries manually annotated by the ChEBI curator team.

Examples

head(fetch_chebi())

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release