protti: find_all_subs – R documentation

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find_all_subs

Find all ChEBI sub IDs of an ID

Description

For a given ChEBI ID, find all ChEBI sub IDs (incoming IDs) and their sub IDs. The type of relationship can be selected too. This is a helper function for other functions.

Usage

find_all_subs(data, id, type = "is_a")

Arguments

`data`	A data frame that contains information on ChEBI IDs (id), their sub IDs (incoming) and their relationship (type). This data frame can be obtained by calling `fetch_chebi(relation = TRUE)`.
`id`	A character vector of ChEBI IDs for which sub IDs should be retreived.
`type`	A character vector containing the type of relationship that should be considered for retreival. It is possible to use "all" relationships. The default type is "is_a". A list of possible relationships can be found here.

Value

A list of character vector containing the provided ID and all of its sub IDs. It contains one element per input ID.

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release